Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3571

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11938 and 11939 are separated by 687 nucleotides11939 and 11940 are separated by 479 nucleotides mRNA_3570: 11938 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 75,276 to 76,903 11938 mRNA_3571: 11939 - K03681 RRP40, EXOSC3 exosome complex component RRP40, at 77,591 to 78,625 11939 mRNA_3572: 11940 - K11314 TADA2A, ADA2 transcriptional adapter 2-alpha, at 79,105 to 81,061 11940

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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76,851 + -0.6
76,863 + -0.6
77,105 + -0.2
77,260 - -0.5
77,608 - -0.4
78,743 - +0.6
78,753 + +1.1
78,756 + -0.3
78,889 + +1.9
78,894 + +1.6

Or see this region's nucleotide sequence