Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3586

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11954 and 11955 are separated by 181 nucleotides mRNA_3586: 11954 - HMMPfam-Membrane fusion protein Use1-PF09753, at 110,146 to 111,411 11954 mRNA_3587: 11955 - K12836 U2AF1 splicing factor U2AF 35 kDa subunit, at 111,593 to 112,967 11955

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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109,191 + +1.1
109,232 + +1.0
109,253 - +0.8
109,262 - -0.8
109,360 + +1.8
109,398 - +0.0
109,398 + +0.4
109,403 + +0.8
109,410 - +0.4
109,414 + +1.7
109,432 - -1.2
109,468 - +1.6
109,470 - -1.0
109,477 + -0.8
109,547 + -0.4
109,567 + +0.8
109,574 - +1.2
109,577 + -0.8
109,585 - -0.6
109,586 - -1.2
109,623 - +0.2
109,646 + -0.2
109,666 - +0.3
109,792 - -1.0
109,875 - -0.3
109,929 - -0.6
109,953 - -0.1
109,965 + +1.0
109,984 + -1.6
109,993 - -0.4
110,079 - -1.4
111,489 + +0.6
111,502 + -0.1

Or see this region's nucleotide sequence