Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3597

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11964 and 11965 are separated by 179 nucleotides mRNA_3596: 11964 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 131,256 to 132,687 11964 mRNA_3597: 11965 - K15562 BUR1, SGV1 serine/threonine-protein kinase BUR1, at 132,867 to 134,971 11965

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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131,877 + 11964 mRNA_3596 0.43 -0.1
131,921 - 11964 mRNA_3596 0.46 +0.1
132,223 + 11964 mRNA_3596 0.68 +0.6
132,653 + +1.5
132,816 - +0.1
132,941 + -0.7
133,065 - -0.6
133,293 - 11965 mRNA_3597 0.20 +1.3
135,177 + -1.3
135,272 - -0.3
135,762 - -1.5
135,763 + -0.7

Or see this region's nucleotide sequence