Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3623

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11991 and 11992 are separated by 689 nucleotides mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190,258 to 192,689 11991 mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193,379 to 194,590 11992

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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189,260 - +1.1
189,272 - -0.2
189,292 - -1.3
189,296 - +2.5
189,304 - +0.8
189,371 + +0.7
189,408 - +0.6
189,432 + +0.6
189,445 - -0.1
189,456 + +0.2
190,499 + +0.6
190,899 + 11991 mRNA_3623 0.26 -0.1
191,043 - 11991 mRNA_3623 0.32 -1.1
191,504 - 11991 mRNA_3623 0.51 -0.5
192,235 + 11991 mRNA_3623 0.81 +0.1
192,361 - 11991 mRNA_3623 0.86 +0.6
192,665 - +1.0
192,814 + +0.3
192,873 + -1.1
192,949 - +1.0
192,960 + +0.2
192,977 - +0.5
192,985 - +0.9
193,114 + +0.2
193,124 + -1.0
193,126 + -0.7
193,139 + +0.4

Or see this region's nucleotide sequence