Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3634

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12001 and 12002 are separated by 409 nucleotides12002 and 12003 are separated by 162 nucleotides mRNA_3633: 12001 - KOG1074 Transcriptional repressor SALM, at 211,047 to 213,295 12001 mRNA_3634: 12002 - KOG2456 Aldehyde dehydrogenase, at 213,705 to 215,567 12002 mRNA_3635: 12003 - BLAST similar to An07g01410 [Aspergillus kawachii IFO 4308], at 215,730 to 216,270 12003

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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212,740 + 12001 mRNA_3633 0.75 +0.9
212,828 + 12001 mRNA_3633 0.79 -0.1
213,027 - 12001 mRNA_3633 0.88 -0.5
213,304 - -0.1
213,430 - +0.6
213,771 + +0.2
214,018 - 12002 mRNA_3634 0.17 -1.3
214,027 + 12002 mRNA_3634 0.17 +0.6
214,047 + 12002 mRNA_3634 0.18 +1.4
214,070 + 12002 mRNA_3634 0.20 +2.4
214,266 + 12002 mRNA_3634 0.30 +0.6
214,350 - 12002 mRNA_3634 0.35 -0.2
215,042 - 12002 mRNA_3634 0.72 -1.0
215,330 - 12002 mRNA_3634 0.87 +1.1
215,507 - -0.3
215,627 - -1.6
215,638 + +0.2
215,663 - -2.0
215,672 + -1.7
215,952 + 12003 mRNA_3635 0.41 +0.1
216,212 + 12003 mRNA_3635 0.89 -0.6
216,392 - -0.5
216,401 + +0.3
216,412 - +1.1
216,539 - -0.4
216,541 - -0.7
216,546 + +1.2
216,567 + -0.9

Or see this region's nucleotide sequence