Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3643

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12010 and 12011 are separated by 487 nucleotides mRNA_3642: 12010 - K08818 CDC2L cell division cycle 2-like, at 232,262 to 233,977 12010 mRNA_3643: 12011 - HMMPfam-Protein of unknown function (DUF1765)-PF08578, at 234,465 to 241,327 12011

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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233,988 - +0.2
233,998 + -1.0
234,004 + -0.2
234,155 + -0.2
234,279 + -1.5
234,535 - -1.0
235,189 - 12011 mRNA_3643 0.11 -0.4
235,314 + 12011 mRNA_3643 0.12 -0.9
235,324 + 12011 mRNA_3643 0.13 -1.3
235,331 - 12011 mRNA_3643 0.13 +1.3
235,441 + 12011 mRNA_3643 0.14 -0.0
235,612 - 12011 mRNA_3643 0.17 +0.3
235,779 - 12011 mRNA_3643 0.19 +0.2
235,796 + 12011 mRNA_3643 0.19 -2.1
236,142 + 12011 mRNA_3643 0.24 +0.2
236,458 - 12011 mRNA_3643 0.29 -0.0
236,663 - 12011 mRNA_3643 0.32 -0.7
237,164 + 12011 mRNA_3643 0.39 -0.4
237,327 - 12011 mRNA_3643 0.42 -2.6
237,582 + 12011 mRNA_3643 0.45 +2.1
237,609 + 12011 mRNA_3643 0.46 -1.3
237,648 - 12011 mRNA_3643 0.46 -0.1
237,739 + 12011 mRNA_3643 0.48 -0.4
237,900 + 12011 mRNA_3643 0.50 +0.1
238,011 + 12011 mRNA_3643 0.52 -1.5
238,188 - 12011 mRNA_3643 0.54 +0.6
238,343 + 12011 mRNA_3643 0.57 +1.1
238,407 - 12011 mRNA_3643 0.57 -0.2
238,415 + 12011 mRNA_3643 0.58 +0.2
238,509 - 12011 mRNA_3643 0.59 +0.5
238,528 - 12011 mRNA_3643 0.59 -0.6
238,528 - 12011 mRNA_3643 0.59 -1.1
238,532 - 12011 mRNA_3643 0.59 -2.8
238,538 - 12011 mRNA_3643 0.59 -3.4
238,609 - 12011 mRNA_3643 0.60 -1.2
238,753 + 12011 mRNA_3643 0.62 +1.2
238,893 + 12011 mRNA_3643 0.65 -0.1
239,598 + 12011 mRNA_3643 0.75 -0.6
239,797 - 12011 mRNA_3643 0.78 -0.2
239,798 + 12011 mRNA_3643 0.78 -0.5
239,873 + 12011 mRNA_3643 0.79 -1.8
240,215 - 12011 mRNA_3643 0.84 +0.4
240,235 + 12011 mRNA_3643 0.84 +0.8
240,473 - 12011 mRNA_3643 0.88 +1.2
240,512 - 12011 mRNA_3643 0.88 -1.5
240,553 + 12011 mRNA_3643 0.89 -0.8
240,790 - -1.4
240,791 - -0.9
240,960 + -0.4
240,997 + +0.4
241,241 - -0.3
241,302 - +2.9
241,519 - -0.7
241,536 - -0.9
241,559 + -1.7
241,820 - -0.6
241,822 + -0.7
241,836 + -1.3
241,965 + -0.8
241,967 + -1.6
241,991 + -1.5
241,995 + -0.3
242,098 - +0.7
242,115 - -0.1
242,122 + +0.2
242,123 - +1.3
242,132 - +1.7
242,143 + -1.6
242,144 + -0.4
242,146 - -2.0
242,259 + -0.8
242,302 + +0.2
242,306 + +1.5

Or see this region's nucleotide sequence