Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3646

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12014 and 12015 are separated by 455 nucleotides mRNA_3646: 12014 - Hypothetical Protein, at 249,601 to 250,328 12014 mRNA_3647: 12015 - Hypothetical Protein, at 250,784 to 251,947 12015

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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248,776 - -0.4
248,918 + -0.9
249,041 - -0.5
249,567 - +0.5
249,647 - -0.2
249,650 + -0.4
249,729 + 12014 mRNA_3646 0.18 +0.1
249,735 - 12014 mRNA_3646 0.18 -0.4
249,756 - 12014 mRNA_3646 0.21 +2.0
249,765 + 12014 mRNA_3646 0.23 -1.5
249,771 - 12014 mRNA_3646 0.23 +0.3
249,781 - 12014 mRNA_3646 0.25 -0.0
249,786 - 12014 mRNA_3646 0.25 +0.5
249,790 - 12014 mRNA_3646 0.26 -0.0
249,795 - 12014 mRNA_3646 0.27 +0.2
249,797 - 12014 mRNA_3646 0.27 -0.3
249,804 + 12014 mRNA_3646 0.28 -0.9
249,806 + 12014 mRNA_3646 0.28 -0.5
249,816 - 12014 mRNA_3646 0.30 +0.1
249,822 - 12014 mRNA_3646 0.30 -0.4
249,927 + 12014 mRNA_3646 0.45 -1.2
249,941 - 12014 mRNA_3646 0.47 +0.9
249,945 + 12014 mRNA_3646 0.47 +0.6
249,946 + 12014 mRNA_3646 0.47 -0.7
249,947 - 12014 mRNA_3646 0.48 +0.3
249,953 - 12014 mRNA_3646 0.48 +0.6
249,954 - 12014 mRNA_3646 0.48 -1.0
249,955 + 12014 mRNA_3646 0.49 -2.7
249,963 + 12014 mRNA_3646 0.50 -0.1
249,966 - 12014 mRNA_3646 0.50 -1.2
249,976 - 12014 mRNA_3646 0.52 +0.1
249,982 + 12014 mRNA_3646 0.52 +0.8
250,079 - 12014 mRNA_3646 0.66 -1.1
250,238 - 12014 mRNA_3646 0.88 -0.3
250,246 - 12014 mRNA_3646 0.89 -0.4
250,246 - 12014 mRNA_3646 0.89 +0.2
250,249 + 12014 mRNA_3646 0.89 -1.3
250,250 - 12014 mRNA_3646 0.89 +0.0
250,254 + 12014 mRNA_3646 0.90 -0.3
250,254 - 12014 mRNA_3646 0.90 -0.9
250,254 + 12014 mRNA_3646 0.90 +0.5
250,255 + 12014 mRNA_3646 0.90 -0.8
250,259 - -0.8
250,262 - -0.6
250,263 + +0.5
250,263 + -0.9
250,269 + +1.2
250,298 - -0.6
250,322 + +0.5
250,330 - +0.9
250,346 - -1.6
250,358 + -0.8
250,455 - -0.5
250,464 - +0.8
250,468 + +0.0
250,738 - -0.5
250,758 + -0.2
250,765 + -0.8
251,206 + 12015 mRNA_3647 0.36 -0.4
251,312 - 12015 mRNA_3647 0.45 +0.2

Or see this region's nucleotide sequence