Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3649

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12016 and 12017 are separated by 599 nucleotides12017 and 12018 are separated by 946 nucleotides mRNA_3648: 12016 - K15448 TRM112, TRMT112 multifunctional methyltransferase subunit TRM112, at 252,546 to 253,342 12016 mRNA_3649: 12017 - HMMPfam-Protein of unknown function, DUF604-PF04646, at 253,942 to 255,854 12017 mRNA_3650: 12018 - Hypothetical Protein, at 256,801 to 258,115 12018

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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253,376 + -1.0
253,490 - -1.4
253,537 + +0.4
253,631 + -1.3
253,650 + -0.9
253,653 - +1.3
253,660 - +1.2
253,664 + +0.4
253,687 - +0.2
253,692 + -0.8
253,796 + +0.6
253,810 - -0.4
253,810 + -0.1
253,835 - +2.0
253,968 - +2.0
254,553 - 12017 mRNA_3649 0.32 +0.4
255,440 + 12017 mRNA_3649 0.78 +1.2
255,552 - 12017 mRNA_3649 0.84 +1.0
255,556 - 12017 mRNA_3649 0.84 +1.0
255,556 - 12017 mRNA_3649 0.84 -1.2
255,698 - +0.7
255,718 + +0.1
255,837 - +0.2
255,875 + +2.6
255,995 - -0.4
256,006 - -0.6
256,015 - -0.1
256,020 + -0.5
256,046 + +0.9
256,084 - +1.0
256,131 - +0.5
256,139 + -1.6
256,156 + -1.3
256,262 + -1.4
256,279 - +0.7
256,280 - -0.3
256,282 + -1.3
256,286 + +0.7
256,286 - +0.2
256,287 - -0.3
256,288 + +0.4
256,288 + -1.4
256,297 + -1.4
256,298 + -1.0
256,300 - +0.7
256,301 + +1.0
256,310 - +0.7
256,314 - -0.1
256,327 + +0.0
256,333 - -0.9
256,377 - +1.6
256,379 + -1.0
256,379 + -0.3
256,384 - -2.2
256,393 - -1.1
256,400 + +0.2
256,404 - +1.4
256,435 - -0.8
256,436 - -1.3
256,447 - +0.1
256,450 + -1.5
256,453 + -1.5
256,461 + -0.6
256,463 - -2.3
256,468 + -0.6
256,470 - +2.9
256,475 - +1.0
256,481 - -1.2
256,484 + -0.6
256,486 - +2.3
256,486 - -0.5
256,491 - -0.8
256,492 + +0.5
256,509 - -1.0
256,512 + -1.3
256,522 - +0.9
256,525 + -2.8
256,530 + +1.6
256,542 - -0.4
256,543 - +0.9
256,548 - -1.2
256,555 - -1.7
256,570 - -1.4
256,572 + -1.0
256,574 - +0.1
256,596 + +0.3
256,600 - -0.5
256,606 - -1.3
256,612 - +2.0
256,613 - +0.1
256,614 + +0.4
256,615 - -0.9
256,618 - -1.0
256,620 - -1.2
256,622 + +0.9
256,624 - +0.2
256,627 + -1.3
256,637 + -0.4
256,640 - +1.3
256,644 - +1.3
256,645 - -0.8
256,646 + +1.0
256,655 + +1.0
256,655 - -1.0
256,661 - +0.3
256,661 - -0.7
256,665 - +1.0
256,676 + -1.2
256,681 + +0.6
256,706 + +0.0
256,785 - +1.8
256,825 + +0.1
256,835 - +1.3

Or see this region's nucleotide sequence