Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3653

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12020 and 12021 are separated by 125 nucleotides mRNA_3652: 12020 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 259,462 to 260,271 12020 mRNA_3653: 12021 - KOG2437 Muskelin, at 260,397 to 263,923 12021

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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259,431 - +0.4
259,459 + +0.1
259,576 - 12020 mRNA_3652 0.14 +0.7
259,600 + 12020 mRNA_3652 0.17 +3.0
259,727 + 12020 mRNA_3652 0.33 -0.8
259,736 - 12020 mRNA_3652 0.34 -1.0
259,766 + 12020 mRNA_3652 0.38 +1.5
259,915 + 12020 mRNA_3652 0.56 -0.3
260,019 + 12020 mRNA_3652 0.69 +0.3
260,029 + 12020 mRNA_3652 0.70 -0.8
260,045 + 12020 mRNA_3652 0.72 -0.1
260,322 - +1.2
260,324 + +2.5
260,329 - -0.3
260,330 + -1.3
260,335 + +1.2
260,336 + +0.6
260,340 + +0.8
260,458 - -0.7
260,490 + -0.3
260,498 + +0.7
260,517 + +0.8
260,620 - -1.0
260,620 - -0.1
260,659 + -1.0
260,772 + 12021 mRNA_3653 0.11 +1.2
260,779 + 12021 mRNA_3653 0.11 +1.0
260,781 + 12021 mRNA_3653 0.11 -0.0
260,787 + 12021 mRNA_3653 0.11 +0.6
260,792 + 12021 mRNA_3653 0.11 -0.0
260,816 + 12021 mRNA_3653 0.12 -1.1
260,928 - 12021 mRNA_3653 0.15 +1.5
260,947 + 12021 mRNA_3653 0.16 +1.2
261,105 + 12021 mRNA_3653 0.20 +2.2
261,479 + 12021 mRNA_3653 0.31 +0.9
261,643 + 12021 mRNA_3653 0.35 +1.3
261,662 - 12021 mRNA_3653 0.36 -0.4
262,047 - 12021 mRNA_3653 0.47 -0.6
262,056 - 12021 mRNA_3653 0.47 +2.3
262,325 + 12021 mRNA_3653 0.55 +2.2
262,481 - 12021 mRNA_3653 0.59 -1.0
262,768 + 12021 mRNA_3653 0.67 +0.2
263,042 - 12021 mRNA_3653 0.75 +0.3
263,222 + 12021 mRNA_3653 0.80 -1.5
263,645 - -1.4
263,805 + -0.6
263,816 + +0.5
263,914 + -0.3
263,930 + -1.1
263,944 - +0.5
264,093 + +0.6
264,098 + -3.0
264,106 + -0.5
264,108 + +0.1
264,110 + -2.3
264,117 + +1.6
264,122 + -0.9
264,169 - -1.0
264,308 - -0.7
264,312 - +0.8
264,325 - -1.3
264,332 + +0.7
264,332 - -1.4
264,334 + -1.2
264,399 - -0.0
264,459 + -0.8
264,462 + -0.5
264,466 - -0.1
264,466 - +0.5
264,467 + -1.0
264,479 - +1.0
264,575 - -0.1
264,585 - +1.0
264,599 + -0.3
264,599 - -0.6
264,601 + +2.2
264,603 + +0.3
264,619 - +0.4
264,633 - +0.3
264,656 + +0.2
264,668 - -1.4
264,744 - +0.1
264,829 - -0.4
264,891 + -0.1
264,897 - -1.2

Or see this region's nucleotide sequence