Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3662

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12028 and 12029 overlap by 8 nucleotides12029 and 12030 are separated by 123 nucleotides12030 and 12031 are separated by 177 nucleotides mRNA_3660: 12028 - HMMPfam-ATPase family associated with various cellular activities (AAA)-PF00004,SUPERFAMILY--SSF52540, at 285,259 to 286,189 12028 mRNA_3661: 12029 - Hypothetical Protein, at 286,182 to 286,643 12029 mRNA_3662: 12030 - KOG2768 Translation initiation factor 2, beta subunit (eIF-2beta), at 286,767 to 288,003 12030 mRNA_3663: 12031 - K01738 cysK cysteine synthase A, at 288,181 to 289,942 12031

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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285,805 + 12028 mRNA_3660 0.59 -1.1
286,475 - 12029 mRNA_3661 0.63 -0.1
286,530 + 12029 mRNA_3661 0.75 -3.5
286,532 - 12029 mRNA_3661 0.76 -0.2
286,536 + 12029 mRNA_3661 0.77 +0.4
286,541 + 12029 mRNA_3661 0.78 +0.1
286,545 - 12029 mRNA_3661 0.79 -0.6
286,560 + 12029 mRNA_3661 0.82 +1.3
286,591 - 12029 mRNA_3661 0.89 +1.0
286,706 - +2.3
286,720 + +0.1
286,721 - +0.3
286,767 + -0.4
286,858 + +0.4
286,879 - +0.3
286,890 - +0.1
286,891 + 12030 mRNA_3662 0.10 -0.8
286,922 - 12030 mRNA_3662 0.13 +1.1
286,972 - 12030 mRNA_3662 0.17 +0.1
286,982 + 12030 mRNA_3662 0.17 +0.6
287,010 + 12030 mRNA_3662 0.20 +0.1
287,063 - 12030 mRNA_3662 0.24 -0.3
287,063 + 12030 mRNA_3662 0.24 +0.0
287,070 + 12030 mRNA_3662 0.24 +0.4
287,079 - 12030 mRNA_3662 0.25 -0.4
287,085 - 12030 mRNA_3662 0.26 -1.1
287,092 + 12030 mRNA_3662 0.26 +0.1
287,100 + 12030 mRNA_3662 0.27 +1.2
287,107 - 12030 mRNA_3662 0.27 -0.4
287,108 + 12030 mRNA_3662 0.28 +0.6
287,211 + 12030 mRNA_3662 0.36 -0.1
287,221 - 12030 mRNA_3662 0.37 +1.9
287,222 + 12030 mRNA_3662 0.37 +0.2
287,231 - 12030 mRNA_3662 0.38 +0.1
287,237 - 12030 mRNA_3662 0.38 +0.5
287,239 + 12030 mRNA_3662 0.38 +0.1
287,246 + 12030 mRNA_3662 0.39 +0.5
287,247 - 12030 mRNA_3662 0.39 -0.9
287,248 + 12030 mRNA_3662 0.39 -1.2
287,248 - 12030 mRNA_3662 0.39 -1.8
287,254 + 12030 mRNA_3662 0.39 +1.2
287,272 + 12030 mRNA_3662 0.41 +0.2
287,308 - 12030 mRNA_3662 0.44 -0.3
287,334 + 12030 mRNA_3662 0.46 +0.6
287,346 + 12030 mRNA_3662 0.47 +0.7
287,389 + 12030 mRNA_3662 0.50 +0.3
287,403 - 12030 mRNA_3662 0.51 +2.2
287,408 + 12030 mRNA_3662 0.52 +0.7
287,410 + 12030 mRNA_3662 0.52 +0.6
287,412 - 12030 mRNA_3662 0.52 +1.0
287,419 + 12030 mRNA_3662 0.53 +0.8
287,421 + 12030 mRNA_3662 0.53 -0.2
287,429 - 12030 mRNA_3662 0.54 +0.6
287,431 - 12030 mRNA_3662 0.54 -3.9
287,433 - 12030 mRNA_3662 0.54 +0.6
287,446 - 12030 mRNA_3662 0.55 +0.1
287,478 + 12030 mRNA_3662 0.57 +0.3
287,507 - 12030 mRNA_3662 0.60 -0.7
287,543 - 12030 mRNA_3662 0.63 -1.2
287,546 + 12030 mRNA_3662 0.63 +1.1
287,579 - 12030 mRNA_3662 0.66 +0.4
287,684 - 12030 mRNA_3662 0.74 -0.2
287,687 + 12030 mRNA_3662 0.74 -0.2
287,706 - 12030 mRNA_3662 0.76 +1.0
287,712 - 12030 mRNA_3662 0.76 -0.6
287,723 - 12030 mRNA_3662 0.77 -1.3
287,731 - 12030 mRNA_3662 0.78 +2.8
287,732 - 12030 mRNA_3662 0.78 -0.4
287,738 - 12030 mRNA_3662 0.78 +0.8
287,760 - 12030 mRNA_3662 0.80 +0.1
287,779 - 12030 mRNA_3662 0.82 -0.5
287,803 - 12030 mRNA_3662 0.84 +0.9
288,237 - -2.3
288,491 - 12031 mRNA_3663 0.18 -3.3
288,966 - 12031 mRNA_3663 0.45 -2.6
288,976 + 12031 mRNA_3663 0.45 -1.9

Or see this region's nucleotide sequence