Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3672

Experiment: YNB Ricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12039 and 12040 are separated by 248 nucleotides mRNA_3671: 12039 - K07562 NMD3 nonsense-mediated mRNA decay protein 3, at 309,308 to 311,181 12039 mRNA_3672: 12040 - BLAST putative ribonuclease mrp protein subunit rmp1 [Diapo..., at 311,430 to 311,771 12040

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
remove
311,239 + +0.6
311,239 - +0.4
311,357 - -0.1
311,375 + +1.1
311,387 - +1.0
311,387 + -1.0
311,394 - -1.3
311,397 - +0.3
311,400 + +0.1
311,416 + -0.1
311,423 + +0.6
312,623 + -0.7

Or see this region's nucleotide sequence