Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3678

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12045 and 12046 are separated by 719 nucleotides12046 and 12047 are separated by 37 nucleotides mRNA_3677: 12045 - KOG0266 WD40 repeat-containing protein, at 321,286 to 323,880 12045 mRNA_3678: 12046 - K14530 RPP40 ribonucleases P/MRP protein subunit RPP40, at 324,600 to 326,289 12046 mRNA_3679: 12047 - K02370 EXTL3 alpha-1,4-N-acetylglucosaminyltransferase EXTL3, at 326,327 to 327,835 12047

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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323,769 - -0.1
323,941 + -0.2
324,054 + -0.2
324,368 - -1.0
324,393 - +1.7
324,393 - +0.1
324,394 - +1.6
324,398 - -1.3
324,402 + -1.1
324,406 + -0.1
324,548 + +0.4
326,123 - -1.8
326,454 - -0.8
326,456 - -0.7
326,464 + -1.5
326,779 + 12047 mRNA_3679 0.30 -0.6
326,913 - 12047 mRNA_3679 0.39 -0.1
327,068 + 12047 mRNA_3679 0.49 +0.3
327,069 - 12047 mRNA_3679 0.49 +4.7
327,082 + 12047 mRNA_3679 0.50 -0.8
327,183 - 12047 mRNA_3679 0.57 +1.5
327,201 + 12047 mRNA_3679 0.58 +0.2

Or see this region's nucleotide sequence