Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3714

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12081 and 12082 are separated by 503 nucleotides12082 and 12083 are separated by 234 nucleotides mRNA_3713: 12081 - KOG4756 Mitochondrial ribosomal protein L27, at 411,830 to 412,320 12081 mRNA_3714: 12082 - K14006 SEC23 protein transport protein SEC23, at 412,824 to 415,636 12082 mRNA_3715: 12083 - K11713 PGTB1 geranylgeranyl transferase type-1 subunit beta, at 415,871 to 417,515 12083

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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412,370 + +1.1
412,517 - -2.0
412,520 - +1.4
412,520 - -2.5
412,647 - -0.2
412,648 - +0.6
412,653 - -0.3
412,669 - +0.1
412,776 - -0.1
415,840 + -0.9
416,025 - +0.2

Or see this region's nucleotide sequence