Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3737

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12104 and 12105 are separated by 269 nucleotides12105 and 12106 are separated by 258 nucleotides mRNA_3736: 12104 - K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 463,337 to 464,527 12104 mRNA_3737: 12105 - BLAST TPR-2 domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 464,797 to 466,425 12105 mRNA_3738: 12106 - K06689 UBE2D, UBC4, UBC5 ubiquitin-conjugating enzyme E2 D, at 466,684 to 467,899 12106

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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463,990 - 12104 mRNA_3736 0.55 +0.5
464,462 + +0.2
464,575 + +0.1
464,577 - -0.4
464,587 + +0.2
464,594 + -0.5
464,602 + +0.5
464,608 + +0.4
464,731 - +0.4
465,084 + 12105 mRNA_3737 0.18 -0.5
465,616 - 12105 mRNA_3737 0.50 +0.4
466,095 - 12105 mRNA_3737 0.80 -0.9
466,341 + -0.1
466,356 - +0.0
466,379 + +0.7
466,470 - -0.8
466,619 - -0.2
466,622 - -0.1
466,622 - +0.5
466,628 - -0.9
466,636 - +0.8
466,646 - +0.9
466,658 - -0.6

Or see this region's nucleotide sequence