Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3755

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12122 and 12123 are separated by 334 nucleotides12123 and 12124 are separated by 72 nucleotides mRNA_3754: 12122 - K01641 E2.3.3.10 hydroxymethylglutaryl-CoA synthase, at 509,040 to 510,998 12122 mRNA_3755: 12123 - K01893 NARS, asnS asparaginyl-tRNA synthetase, at 511,333 to 513,065 12123 mRNA_3756: 12124 - HMMPfam-Protein of unknown function (DUF2665)-PF11654, at 513,138 to 513,518 12124

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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511,008 + +0.4
511,014 - +2.1
511,018 + +2.4
511,019 + +0.9
511,024 + +0.3
511,150 + -1.0
511,160 - +0.9
511,163 - -0.8
511,165 - +0.2
511,171 - -0.7
511,174 - +0.8
511,177 - +0.6
511,178 - +1.4
511,180 + +0.1
511,180 + +0.3
511,181 - -0.4
511,184 + -0.3
511,184 + -2.5
511,186 + +0.0
511,212 - +0.9
513,091 - -1.2
513,244 + 12124 mRNA_3756 0.28 -0.2
513,289 + 12124 mRNA_3756 0.40 -1.8
513,400 + 12124 mRNA_3756 0.69 +0.1
513,420 - 12124 mRNA_3756 0.74 -1.7
513,544 + +2.3
513,651 + +2.0
513,978 + +0.3
513,991 + -0.3

Or see this region's nucleotide sequence