Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3763

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12130 and 12131 are separated by 343 nucleotides12131 and 12132 are separated by 155 nucleotides mRNA_3762: 12130 - Hypothetical Protein, at 525,460 to 525,822 12130 mRNA_3763: 12131 - Hypothetical Protein, at 526,166 to 531,244 12131 mRNA_3764: 12132 - K11808 ADE2 phosphoribosylaminoimidazole carboxylase, at 531,400 to 533,650 12132

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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525,171 - +0.1
525,252 - +0.4
525,269 + -1.1
525,377 + -0.1
525,566 + 12130 mRNA_3762 0.29 +0.6
525,844 + -0.0
525,949 - +0.2
526,106 - -0.4
526,131 + -0.4
526,253 - -1.9
526,280 - -0.7
526,284 + -0.2
526,285 + -0.7
526,389 - -0.1
526,394 - +0.3
526,947 - 12131 mRNA_3763 0.15 -0.3
527,161 - 12131 mRNA_3763 0.20 -0.9
527,161 + 12131 mRNA_3763 0.20 -0.1
527,982 + 12131 mRNA_3763 0.36 -1.6
528,022 + 12131 mRNA_3763 0.37 +0.4
528,091 - 12131 mRNA_3763 0.38 -0.5
528,109 - 12131 mRNA_3763 0.38 -0.3
528,117 + 12131 mRNA_3763 0.38 -1.0
528,133 + 12131 mRNA_3763 0.39 +0.4
528,134 - 12131 mRNA_3763 0.39 -2.6
528,304 + 12131 mRNA_3763 0.42 +0.9
528,398 - 12131 mRNA_3763 0.44 -1.2
528,413 + 12131 mRNA_3763 0.44 -0.3
528,606 - 12131 mRNA_3763 0.48 +1.6
529,000 - 12131 mRNA_3763 0.56 +0.0
530,160 - 12131 mRNA_3763 0.79 -0.9
530,222 - 12131 mRNA_3763 0.80 -0.8
530,452 - 12131 mRNA_3763 0.84 +0.0
530,559 - 12131 mRNA_3763 0.86 +0.8
530,902 + +1.3

Or see this region's nucleotide sequence