Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3800

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12167 and 12168 are separated by 203 nucleotides12168 and 12169 are separated by 132 nucleotides mRNA_3799: 12167 - KOG1611 Predicted short chain-type dehydrogenase, at 605,177 to 606,005 12167 mRNA_3800: 12168 - K14715 SLC39A9, ZIP9 solute carrier family 39 (zinc transporter), member 9, at 606,209 to 607,581 12168 mRNA_3801: 12169 - K12591 RRP6, EXOSC10 exosome complex exonuclease RRP6, at 607,714 to 610,860 12169

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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605,481 - 12167 mRNA_3799 0.37 -0.1
606,224 - +0.0
606,393 + 12168 mRNA_3800 0.13 +1.2
607,068 - 12168 mRNA_3800 0.63 +0.1
607,373 - 12168 mRNA_3800 0.85 -0.3
607,636 - -0.1

Or see this region's nucleotide sequence