Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3803

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12170 and 12171 are separated by 965 nucleotides12171 and 12172 are separated by 320 nucleotides mRNA_3802: 12170 - K01939 purA, ADSS adenylosuccinate synthase, at 611,047 to 612,951 12170 mRNA_3803: 12171 - Hypothetical Protein, at 613,917 to 616,021 12171 mRNA_3804: 12172 - Hypothetical Protein, at 616,342 to 617,222 12172

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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612,960 - +0.5
612,981 - +0.0
612,990 + -1.1
612,990 + -0.8
612,995 + +0.1
612,997 - -1.4
613,294 + -2.8
613,295 - -1.6
613,300 + -0.5
613,581 + -0.8
613,597 - +0.8
613,998 + -1.1
614,025 + -1.0
614,482 - 12171 mRNA_3803 0.27 +1.0
614,487 + 12171 mRNA_3803 0.27 +1.6
614,630 + 12171 mRNA_3803 0.34 +1.0
614,641 + 12171 mRNA_3803 0.34 +0.3
615,832 - +0.7
616,003 + -0.3
616,104 - -0.9
616,503 + 12172 mRNA_3804 0.18 -2.9
616,531 + 12172 mRNA_3804 0.21 +0.1
616,537 - 12172 mRNA_3804 0.22 -1.8
616,689 + 12172 mRNA_3804 0.39 -0.1
616,689 + 12172 mRNA_3804 0.39 -0.3
616,689 + 12172 mRNA_3804 0.39 +0.8
616,691 - 12172 mRNA_3804 0.40 -1.5
616,816 + 12172 mRNA_3804 0.54 -0.3
616,846 - 12172 mRNA_3804 0.57 +1.2
616,969 - 12172 mRNA_3804 0.71 +2.8
616,977 + 12172 mRNA_3804 0.72 -0.3
616,981 + 12172 mRNA_3804 0.73 +0.3
617,008 - 12172 mRNA_3804 0.76 +0.4

Or see this region's nucleotide sequence