Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3809

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12176 and 12177 are separated by 717 nucleotides12177 and 12178 are separated by 403 nucleotides mRNA_3808: 12176 - Hypothetical Protein, at 629,784 to 630,446 12176 mRNA_3809: 12177 - Hypothetical Protein, at 631,164 to 632,051 12177 mRNA_3810: 12178 - K12869 CRN, CRNKL1, CLF1, SYF3 crooked neck, at 632,455 to 635,215 12178

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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630,520 - -1.1
630,642 - +1.5
630,646 + -1.7
630,656 + -1.9
630,668 + +0.4
630,760 + +0.1
630,812 + +4.2
630,822 + -0.1
630,957 + +0.3
631,056 - -1.5
631,244 - -0.9
631,245 + +0.8
632,253 + +0.6
632,400 - +0.4
632,429 - +1.2

Or see this region's nucleotide sequence