Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3822

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12189 and 12190 are separated by 122 nucleotides12190 and 12191 are separated by 96 nucleotides12191 and 12192 are separated by 45 nucleotides mRNA_3821: 12189 - K19001 HELLS, DDM1 ATP-dependent DNA helicase, at 665,422 to 669,105 12189 mRNA_3822: 12190 - HMMPfam-Protein of unknown function (DUF2781)-PF10914,PIRSF--PIRSF031032, at 669,228 to 670,038 12190 mRNA_3823: 12191 - Hypothetical Protein, at 670,135 to 670,720 12191 mRNA_3824: 12192 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 670,766 to 671,114 12192

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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668,372 + 12189 mRNA_3821 0.80 -0.6
668,374 + 12189 mRNA_3821 0.80 +0.3
668,474 + 12189 mRNA_3821 0.83 +0.7
668,554 - 12189 mRNA_3821 0.85 -1.1
668,713 + 12189 mRNA_3821 0.89 -0.2
668,863 + -0.4
668,988 - +0.0
669,009 - -1.5
669,050 + +0.1
669,176 + -1.2
669,178 - +0.2
669,187 - -1.4
669,188 - +0.3
669,197 - +0.6
669,289 + -0.2
669,945 + 12190 mRNA_3822 0.88 +0.6
669,993 - +0.3
670,220 - 12191 mRNA_3823 0.15 +1.3
671,029 - 12192 mRNA_3824 0.75 -0.2

Or see this region's nucleotide sequence