Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3827

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12195 and 12196 are separated by 640 nucleotides mRNA_3827: 12195 - Hypothetical Protein, at 676,929 to 682,172 12195 mRNA_3828: 12196 - Hypothetical Protein, at 682,813 to 683,280 12196

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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675,979 + +0.6
675,993 - -2.7
676,015 + -0.7
676,035 - +1.0
676,076 + -1.0
676,156 + +1.4
676,183 + -2.4
676,187 + +0.2
676,484 + +0.5
677,057 - +2.0
677,625 - 12195 mRNA_3827 0.13 +2.3
677,996 + 12195 mRNA_3827 0.20 +1.8
678,759 + 12195 mRNA_3827 0.35 -0.3
679,502 - 12195 mRNA_3827 0.49 -0.0
679,759 + 12195 mRNA_3827 0.54 +0.7
679,771 + 12195 mRNA_3827 0.54 -0.5
680,198 - 12195 mRNA_3827 0.62 +0.7
680,215 - 12195 mRNA_3827 0.63 -2.7
680,395 + 12195 mRNA_3827 0.66 +0.3
680,729 - 12195 mRNA_3827 0.72 -0.0
680,788 + 12195 mRNA_3827 0.74 -0.6
680,888 - 12195 mRNA_3827 0.75 +0.2
680,900 - 12195 mRNA_3827 0.76 +0.3
681,525 - 12195 mRNA_3827 0.88 -1.1
681,538 - 12195 mRNA_3827 0.88 +1.3
681,681 - +1.1
682,106 - +0.1
682,363 - +1.7
682,364 + +0.3
682,367 - -0.1
682,382 + -1.2
682,520 - +1.0
682,529 + -0.0
682,541 + +0.7
682,543 - -0.2
682,657 + +0.5
682,675 - +1.6
682,681 + -0.2
682,705 - +1.4
682,706 + +1.3
682,709 + +0.3
682,816 - +0.3
682,818 - -0.6
682,831 + -0.4
682,834 + +0.9
682,876 + 12196 mRNA_3828 0.13 -2.3
682,969 - 12196 mRNA_3828 0.33 +1.3
682,969 - 12196 mRNA_3828 0.33 -0.2
683,108 - 12196 mRNA_3828 0.63 -0.7
683,128 - 12196 mRNA_3828 0.67 -1.5
683,139 - 12196 mRNA_3828 0.70 +0.0
683,143 - 12196 mRNA_3828 0.71 -0.3
683,149 + 12196 mRNA_3828 0.72 -0.2
683,152 - 12196 mRNA_3828 0.72 -0.1
683,156 + 12196 mRNA_3828 0.73 -2.4
683,166 - 12196 mRNA_3828 0.75 -0.2
683,166 - 12196 mRNA_3828 0.75 +1.3
683,167 - 12196 mRNA_3828 0.76 -0.1
683,168 + 12196 mRNA_3828 0.76 -0.5
683,170 - 12196 mRNA_3828 0.76 -0.5
683,172 + 12196 mRNA_3828 0.77 -0.0

Or see this region's nucleotide sequence