Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3840

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12207 and 12208 are separated by 295 nucleotides12208 and 12209 are separated by 262 nucleotides mRNA_3839: 12207 - BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh..., at 713,356 to 714,077 12207 mRNA_3840: 12208 - K18849 BMT2 25S rRNA (adenine2142-N1)-methyltransferase, at 714,373 to 715,825 12208 mRNA_3841: 12209 - K13431 SRPR signal recognition particle receptor subunit alpha, at 716,088 to 718,591 12209

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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713,424 - -0.0
713,568 + 12207 mRNA_3839 0.29 -0.5
713,577 - 12207 mRNA_3839 0.31 -0.5
714,021 + +0.2
714,033 + +0.5
714,091 - -1.5
714,301 - -1.1
714,740 + 12208 mRNA_3840 0.25 -0.9
715,003 + 12208 mRNA_3840 0.43 +0.2
715,501 + 12208 mRNA_3840 0.78 +1.0
715,760 + -1.9
715,913 + -0.8
715,918 + -0.4
716,620 - 12209 mRNA_3841 0.21 +0.1
716,780 + 12209 mRNA_3841 0.28 +0.9

Or see this region's nucleotide sequence