Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3845

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12212 and 12213 are separated by 472 nucleotides12213 and 12214 are separated by 988 nucleotides mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723,329 to 725,612 12212 mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726,085 to 727,619 12213 mRNA_3846: 12214 - HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667, at 728,608 to 730,842 12214

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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725,810 - +0.9
725,826 - +0.5
725,831 - +0.8
725,966 - -0.5
725,990 - +0.9
726,093 + +0.2
726,278 + 12213 mRNA_3845 0.13 +0.4
726,552 - 12213 mRNA_3845 0.30 +0.3
726,565 - 12213 mRNA_3845 0.31 +1.5
726,597 + 12213 mRNA_3845 0.33 +0.1
726,987 + 12213 mRNA_3845 0.59 -0.6
727,271 - 12213 mRNA_3845 0.77 +0.8
727,403 + 12213 mRNA_3845 0.86 +0.6
727,558 + -1.1
727,698 + +0.2
727,699 - -0.0
727,711 + -0.6
727,712 - -0.0
727,827 + -2.3
727,842 + +0.7
727,992 - +1.1
728,001 + -0.1
728,007 + +2.0
728,022 - -1.8
728,030 + +0.3
728,260 + +0.1
728,278 - +0.5
728,279 - -0.3
728,282 + +4.6
728,287 - +1.1
728,299 - +0.2
728,308 + +0.8
728,314 + +0.1
728,432 - +0.3
728,436 - -0.6
728,437 + +2.9
728,466 + +0.1
728,590 - +0.0

Or see this region's nucleotide sequence