Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3855

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12222 and 12223 are separated by 272 nucleotides12223 and 12224 are separated by 151 nucleotides mRNA_3854: 12222 - Hypothetical Protein, at 749,490 to 750,342 12222 mRNA_3855: 12223 - SUPERFAMILY--SSF52047, at 750,615 to 752,769 12223 mRNA_3856: 12224 - Hypothetical Protein, at 752,921 to 753,919 12224

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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749,661 - 12222 mRNA_3854 0.20 -0.8
749,852 - 12222 mRNA_3854 0.42 +0.6
749,999 - 12222 mRNA_3854 0.60 +0.0
750,004 + 12222 mRNA_3854 0.60 +0.5
750,021 - 12222 mRNA_3854 0.62 -0.0
750,046 + 12222 mRNA_3854 0.65 +0.3
750,391 + -1.0
751,165 + 12223 mRNA_3855 0.26 +0.7
751,196 + 12223 mRNA_3855 0.27 -2.4
751,907 + 12223 mRNA_3855 0.60 -0.0
752,040 - 12223 mRNA_3855 0.66 -0.2
752,350 + 12223 mRNA_3855 0.81 +1.5
752,492 + 12223 mRNA_3855 0.87 +0.3
752,688 - +1.1
752,784 - +0.7
752,794 + +0.6
752,799 - +0.3
752,801 + -3.8
752,935 + +1.1
752,938 - -2.1
752,944 + -1.4
753,282 + 12224 mRNA_3856 0.36 -0.8
753,655 - 12224 mRNA_3856 0.73 -0.2

Or see this region's nucleotide sequence