Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3864

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12231 and 12232 are separated by 305 nucleotides mRNA_3863: 12231 - KOG1434 Meiotic recombination protein Dmc1, at 769,821 to 771,118 12231 mRNA_3864: 12232 - K08737 MSH6 DNA mismatch repair protein MSH6, at 771,424 to 775,679 12232

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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770,795 - 12231 mRNA_3863 0.75 -1.5
770,994 - +0.8
771,394 - -1.5
771,430 + +0.6
771,542 + +0.1
771,549 - -0.4
771,550 - +0.5
771,602 + -0.4
771,616 + +1.2
771,720 - -2.1
771,862 + 12232 mRNA_3864 0.10 -0.7
772,017 + 12232 mRNA_3864 0.14 -0.7
772,128 + 12232 mRNA_3864 0.17 +0.3
772,209 - 12232 mRNA_3864 0.18 +0.2
772,306 - 12232 mRNA_3864 0.21 -0.8
772,354 - 12232 mRNA_3864 0.22 -0.9
772,355 + 12232 mRNA_3864 0.22 -0.4
772,487 + 12232 mRNA_3864 0.25 +0.1
772,634 - 12232 mRNA_3864 0.28 +0.1
772,643 + 12232 mRNA_3864 0.29 +0.5
772,657 + 12232 mRNA_3864 0.29 +1.2
772,745 - 12232 mRNA_3864 0.31 +1.5
772,866 + 12232 mRNA_3864 0.34 +2.8
772,973 + 12232 mRNA_3864 0.36 +1.0
772,981 + 12232 mRNA_3864 0.37 +0.8
772,988 + 12232 mRNA_3864 0.37 +0.9
773,051 + 12232 mRNA_3864 0.38 +0.5
773,051 + 12232 mRNA_3864 0.38 +0.2
773,273 - 12232 mRNA_3864 0.43 +2.6
773,370 + 12232 mRNA_3864 0.46 +1.2
773,378 + 12232 mRNA_3864 0.46 +0.2
773,483 - 12232 mRNA_3864 0.48 -0.4
773,504 + 12232 mRNA_3864 0.49 +0.4
773,662 + 12232 mRNA_3864 0.53 -0.0
773,662 + 12232 mRNA_3864 0.53 -0.7
773,771 - 12232 mRNA_3864 0.55 +0.9
773,801 + 12232 mRNA_3864 0.56 -1.2
773,869 - 12232 mRNA_3864 0.57 +0.7
773,968 - 12232 mRNA_3864 0.60 +0.8
774,049 + 12232 mRNA_3864 0.62 +0.6
774,083 - 12232 mRNA_3864 0.62 +1.1
774,231 - 12232 mRNA_3864 0.66 +2.1
774,250 + 12232 mRNA_3864 0.66 +0.6
774,250 + 12232 mRNA_3864 0.66 +0.9
774,359 + 12232 mRNA_3864 0.69 +1.1
774,360 - 12232 mRNA_3864 0.69 +1.4
774,796 - 12232 mRNA_3864 0.79 +1.8
774,902 + 12232 mRNA_3864 0.82 +0.6
774,957 - 12232 mRNA_3864 0.83 +0.6
775,053 + 12232 mRNA_3864 0.85 -0.1
775,089 - 12232 mRNA_3864 0.86 +0.5
775,200 - 12232 mRNA_3864 0.89 -1.6
775,375 - -2.5
775,392 + -1.2
775,394 - -0.5
775,642 - -0.3
775,642 - +1.2
775,762 - +3.0
775,969 - -2.3
776,373 - +1.0
776,526 + +1.1
776,547 + -0.6
776,648 - -0.9
776,653 - +1.9
776,657 - -0.2
776,660 - +0.1
776,677 + -2.1

Or see this region's nucleotide sequence