Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3941

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12308 and 12309 are separated by 168 nucleotides12309 and 12310 are separated by 374 nucleotides mRNA_3940: 12308 - KOG3162 Mitochondrial/chloroplast ribosomal protein S18, at 952,149 to 952,942 12308 mRNA_3941: 12309 - Hypothetical Protein, at 953,111 to 953,710 12309 mRNA_3942: 12310 - K20298 VPS52 vacuolar protein sorting-associated protein 52, at 954,085 to 956,912 12310

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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952,970 - +0.5
952,972 + -0.0
953,081 + +0.5
953,117 - -2.9
953,718 + -1.0
953,722 + +0.8
953,835 - +0.3
953,838 + -1.3
953,850 - -0.5
953,850 + +0.1
953,851 - -0.1
953,853 + -0.1
953,963 - +0.5
953,966 - -1.6
953,978 - +0.1
953,987 + -1.1
953,989 + -0.7
953,990 + -1.3
953,990 + +2.4
953,991 - -0.1
953,992 + -0.4
953,992 - +0.0
953,994 - -1.6
953,999 + +0.3
953,999 + +0.2
954,003 + +0.3
954,166 + +0.2
954,570 + 12310 mRNA_3942 0.17 +0.8

Or see this region's nucleotide sequence