Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3955

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12322 and 12323 are separated by 284 nucleotides12323 and 12324 are separated by 379 nucleotides mRNA_3954: 12322 - KOG1426 FOG RCC1 domain, at 985,055 to 988,023 12322 mRNA_3955: 12323 - K02355 fusA, GFM, EFG elongation factor G, at 988,308 to 991,427 12323 mRNA_3956: 12324 - KOG1843 Uncharacterized conserved protein, at 991,807 to 993,961 12324

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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987,657 + 12322 mRNA_3954 0.88 -2.0
987,847 + +1.4
988,046 + -0.4
988,161 - +0.9
988,164 + -0.0
988,167 + +1.5
988,170 - -0.7
988,174 + -1.1
988,188 + +0.4
988,199 + -0.1
989,157 - 12323 mRNA_3955 0.27 -0.7
991,503 - +0.4
991,978 - +1.9
992,291 + 12324 mRNA_3956 0.22 +1.5
992,293 - 12324 mRNA_3956 0.23 +2.5
992,427 + 12324 mRNA_3956 0.29 -0.0

Or see this region's nucleotide sequence