Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3962

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12329 and 12330 are separated by 240 nucleotides12330 and 12331 are separated by 67 nucleotides mRNA_3961: 12329 - KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases, at 1,008,252 to 1,011,828 12329 mRNA_3962: 12330 - K09647 IMP1 mitochondrial inner membrane protease subunit 1, at 1,012,069 to 1,012,859 12330 mRNA_3963: 12331 - HMMPfam-Domain of unknown function (DUF4504)-PF14953, at 1,012,927 to 1,013,924 12331

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,011,724 + +0.0
1,012,020 - -0.9
1,012,046 + +0.8
1,013,035 - 12331 mRNA_3963 0.11 -0.4
1,013,608 + 12331 mRNA_3963 0.68 -1.1
1,013,620 - 12331 mRNA_3963 0.69 -0.0
1,013,628 + 12331 mRNA_3963 0.70 -0.4

Or see this region's nucleotide sequence