Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3990

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12357 and 12358 are separated by 125 nucleotides12358 and 12359 are separated by 197 nucleotides mRNA_3989: 12357 - BLAST Ribonucleases P/MRP protein subunit pop3 [Hypsizygus ..., at 1,085,634 to 1,087,441 12357 mRNA_3990: 12358 - K07561 DPH1, dph2 2-(3-amino-3-carboxypropyl)histidine synthase, at 1,087,567 to 1,089,527 12358 mRNA_3991: 12359 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 1,089,725 to 1,094,754 12359

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,087,507 + +0.2
1,087,528 - +1.0
1,087,538 + -0.3
1,087,539 + -1.3
1,087,700 + -2.4
1,088,123 + 12358 mRNA_3990 0.28 -0.1
1,088,430 + 12358 mRNA_3990 0.44 +0.0
1,088,563 + 12358 mRNA_3990 0.51 -1.1
1,089,465 + -0.8
1,089,480 + +0.7
1,089,944 - +3.3
1,090,396 + 12359 mRNA_3991 0.13 +0.3

Or see this region's nucleotide sequence