Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3995

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12362 and 12363 are separated by 110 nucleotides12363 and 12364 are separated by 726 nucleotides mRNA_3994: 12362 - K11484 HOS3 histone deacetylase HOS3, at 1,100,356 to 1,102,987 12362 mRNA_3995: 12363 - Hypothetical Protein, at 1,103,098 to 1,103,672 12363 mRNA_3996: 12364 - Hypothetical Protein, at 1,104,399 to 1,108,726 12364

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,102,559 - 12362 mRNA_3994 0.84 -0.5
1,102,731 - -0.5
1,102,740 + +0.4
1,102,753 + -0.3
1,102,875 - -1.8
1,102,890 - +0.6
1,103,017 - +0.1
1,103,018 - -0.9
1,103,035 - +0.4
1,103,044 + +0.5
1,104,055 + -1.7
1,104,077 + +2.2
1,104,150 - +1.3
1,104,198 + +1.5
1,104,213 - +0.3
1,104,218 + +0.6
1,104,224 + +1.7
1,104,225 + -0.4
1,104,354 + -1.1
1,104,355 - -0.0
1,104,365 + -0.9

Or see this region's nucleotide sequence