Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4005

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12372 and 12373 are separated by 581 nucleotides12373 and 12374 are separated by 421 nucleotides mRNA_4004: 12372 - KOG1341 Na+/K+ transporter, at 1,126,968 to 1,131,164 12372 mRNA_4005: 12373 - HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,131,746 to 1,132,749 12373 mRNA_4006: 12374 - Hypothetical Protein, at 1,133,171 to 1,133,679 12374

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,131,095 + -1.3
1,131,352 - +0.5
1,131,928 + 12373 mRNA_4005 0.18 +0.6
1,133,054 + +1.2
1,133,294 - 12374 mRNA_4006 0.24 +0.3

Or see this region's nucleotide sequence