Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4050

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_4050: 12418 - K02885 RP-L19e, RPL19 large subunit ribosomal protein L19e, at 1,239,655 to 1,240,764 12418

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,238,663 - -0.6
1,238,682 + +0.2
1,238,687 - +0.5
1,238,794 - -2.5
1,238,803 + -1.2
1,238,806 + -0.4
1,238,815 + +0.8
1,238,959 + +0.7
1,238,995 + +0.9
1,239,079 - -1.0
1,239,094 - +1.3
1,239,094 - +1.3
1,239,108 - +0.4
1,239,242 - -1.4
1,239,255 - +0.3
1,239,255 - +1.2
1,239,267 - +2.2
1,239,283 + +1.3
1,239,402 - +1.5
1,239,412 - +1.1
1,239,415 - +0.5
1,239,427 - +1.5
1,241,068 + -1.9
1,241,362 - +1.2
1,241,448 + +0.0
1,241,451 - -0.9
1,241,472 - +0.4
1,241,474 - +0.5
1,241,474 - +2.5
1,241,476 - -1.1
1,241,482 + -0.0
1,241,483 - +0.0
1,241,483 - -0.5
1,241,484 - -0.8
1,241,513 + +0.1
1,241,528 - +0.4
1,241,532 - -0.1
1,241,545 - +1.0
1,241,567 + -0.6
1,241,583 - -1.1
1,241,601 - -0.0
1,241,619 + +0.8
1,241,622 + -0.0
1,241,626 - +0.9
1,241,628 - -0.2
1,241,640 + -0.3
1,241,641 + +1.5
1,241,645 - -1.1
1,241,647 + +0.1
1,241,656 + -0.5
1,241,660 - +0.7
1,241,671 - -1.0
1,241,673 + +0.5
1,241,676 - -1.1
1,241,685 + +1.7
1,241,687 - +1.8
1,241,694 + -0.3
1,241,696 - +0.7
1,241,701 + +0.3
1,241,704 - -0.6
1,241,720 + +0.3
1,241,728 + +1.3
1,241,739 - -0.1

Or see this region's nucleotide sequence