Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4069

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12436 and 12437 are separated by 171 nucleotides12437 and 12438 are separated by 678 nucleotides mRNA_4068: 12436 - K02575 NRT, narK, nrtP, nasA MFS transporter, NNP family, nitrate/nitrite transporter, at 1,277,194 to 1,279,271 12436 mRNA_4069: 12437 - K05288 PIGO phosphatidylinositol glycan, class O, at 1,279,443 to 1,282,832 12437 mRNA_4070: 12438 - K02877 RP-L15e, RPL15 large subunit ribosomal protein L15e, at 1,283,511 to 1,284,371 12438

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,278,548 - 12436 mRNA_4068 0.65 +2.9
1,278,711 - 12436 mRNA_4068 0.73 +0.8
1,278,734 - 12436 mRNA_4068 0.74 -0.2
1,279,038 - 12436 mRNA_4068 0.89 -0.7
1,279,237 + -0.1
1,279,285 + +0.5
1,282,994 - -0.1
1,282,994 - +0.6
1,283,016 + +1.2
1,283,028 - +0.1
1,283,285 - +0.5

Or see this region's nucleotide sequence