Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4073

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12441 and 12442 are separated by 307 nucleotides mRNA_4073: 12441 - KOG0961 Predicted Zn2+-dependent endopeptidase, insulinase superfamily, at 1,289,384 to 1,292,413 12441 mRNA_4074: 12442 - KOG0961 Predicted Zn2+-dependent endopeptidase, insulinase superfamily, at 1,292,721 to 1,296,857 12442

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,288,773 - +0.3
1,289,010 + -0.2
1,289,011 - +0.0
1,290,347 - 12441 mRNA_4073 0.32 -0.9
1,290,735 + 12441 mRNA_4073 0.45 -0.0
1,291,029 + 12441 mRNA_4073 0.54 +1.0
1,291,151 + 12441 mRNA_4073 0.58 +0.4
1,291,405 - 12441 mRNA_4073 0.67 +1.0
1,291,409 - 12441 mRNA_4073 0.67 +1.4
1,291,409 - 12441 mRNA_4073 0.67 -0.7
1,292,026 + 12441 mRNA_4073 0.87 +0.8
1,292,174 - +0.7
1,292,178 - -0.0
1,292,289 + -0.5
1,292,346 + -0.2
1,292,587 - +1.6
1,292,605 - -0.4
1,292,606 - -3.3
1,292,610 - +2.2
1,292,610 + -3.0
1,292,614 + -0.6
1,292,621 + -0.8
1,292,734 - +0.6
1,292,776 + -0.4
1,292,878 + -2.2
1,292,879 - +0.4
1,293,024 - +1.5
1,293,027 + -0.5

Or see this region's nucleotide sequence