Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4098

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12465 and 12466 are separated by 387 nucleotides12466 and 12467 are separated by 206 nucleotides mRNA_4097: 12465 - KOG1339 Aspartyl protease, at 1,355,805 to 1,357,462 12465 mRNA_4098: 12466 - K19950 SEC9 protein transport protein SEC9, at 1,357,850 to 1,359,153 12466 mRNA_4099: 12467 - HMMPfam-Phenolic acid decarboxylase (PAD)-PF05870,SUPERFAMILY--SSF50814, at 1,359,360 to 1,360,302 12467

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,357,025 + 12465 mRNA_4097 0.74 -3.3
1,357,176 - 12465 mRNA_4097 0.83 -1.4
1,357,314 + -2.2
1,357,462 + -1.2
1,357,583 + -0.1
1,357,601 - -1.0
1,357,605 - -1.5
1,357,607 + -0.2
1,357,612 - +0.3
1,357,614 + +0.9
1,357,625 - +0.6
1,357,731 + +0.3
1,357,733 - +0.9
1,357,738 + -1.5
1,357,740 + -0.8
1,357,753 + +3.0
1,357,765 - +2.1
1,357,768 - -1.8
1,357,777 - -0.0
1,357,784 - +2.8
1,357,787 - +0.3
1,357,789 - +0.3
1,357,807 - -1.8
1,359,208 - +0.1
1,359,369 + +0.1
1,359,370 - -0.5
1,359,510 - 12467 mRNA_4099 0.16 -0.7
1,359,846 - 12467 mRNA_4099 0.52 +0.0
1,359,850 - 12467 mRNA_4099 0.52 +0.2
1,359,971 + 12467 mRNA_4099 0.65 -1.0

Or see this region's nucleotide sequence