Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4108

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12474 and 12475 are separated by 211 nucleotides12475 and 12476 are separated by 141 nucleotides12476 and 12477 are separated by 418 nucleotides mRNA_4106: 12474 - HMMPfam-L-lysine 6-monooxygenase (NADPH-requiring)-PF13434,SUPERFAMILY--SSF51905, at 1,370,124 to 1,372,356 12474 mRNA_4107: 12475 - K00621 GNPNAT1, GNA1 glucosamine-phosphate N-acetyltransferase, at 1,372,568 to 1,373,212 12475 mRNA_4108: 12476 - HMMPfam-Aminotransferase class IV-PF01063,SUPERFAMILY--SSF56752, at 1,373,354 to 1,374,334 12476 mRNA_4109: 12477 - Hypothetical Protein, at 1,374,753 to 1,375,099 12477

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,372,499 - -0.3
1,373,425 - +0.5
1,373,535 + 12476 mRNA_4108 0.18 +0.4
1,374,084 + 12476 mRNA_4108 0.74 +1.0
1,374,158 - 12476 mRNA_4108 0.82 -0.2
1,374,160 + 12476 mRNA_4108 0.82 +0.1
1,374,426 - -0.2
1,374,563 + +1.1
1,374,739 + +0.9
1,374,890 + 12477 mRNA_4109 0.39 +1.4
1,375,003 + 12477 mRNA_4109 0.72 -1.1
1,375,033 + 12477 mRNA_4109 0.81 -1.6

Or see this region's nucleotide sequence