Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4127

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12494 and 12495 are separated by 660 nucleotides12495 and 12496 are separated by 64 nucleotides mRNA_4126: 12494 - K20408 WDR24 WD repeat-containing protein 24, at 1,410,294 to 1,414,666 12494 mRNA_4127: 12495 - K00793 ribE, RIB5 riboflavin synthase, at 1,415,327 to 1,416,353 12495 mRNA_4128: 12496 - K02926 RP-L4, MRPL4, rplD large subunit ribosomal protein L4, at 1,416,418 to 1,417,570 12496

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,414,667 - +0.7
1,414,811 - +0.8
1,415,086 - +0.7
1,415,125 - +0.5
1,415,239 + +0.1
1,415,259 + +0.8
1,416,535 + 12496 mRNA_4128 0.10 -0.3
1,416,548 - 12496 mRNA_4128 0.11 +0.1
1,416,563 - 12496 mRNA_4128 0.13 +1.1

Or see this region's nucleotide sequence