Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4195

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12562 and 12563 are separated by 172 nucleotides12563 and 12564 are separated by 156 nucleotides mRNA_4194: 12562 - K01934 MTHFS 5-formyltetrahydrofolate cyclo-ligase, at 1,584,696 to 1,585,623 12562 mRNA_4195: 12563 - HMMPfam-Protein of unknown function (DUF2962)-PF11176, at 1,585,796 to 1,586,681 12563 mRNA_4196: 12564 - K12343 SRD5A1 3-oxo-5-alpha-steroid 4-dehydrogenase 1, at 1,586,838 to 1,587,953 12564

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,584,812 - 12562 mRNA_4194 0.12 -0.1
1,584,817 - 12562 mRNA_4194 0.13 +1.3
1,584,929 - 12562 mRNA_4194 0.25 +0.1
1,585,105 + 12562 mRNA_4194 0.44 -0.1
1,585,253 - 12562 mRNA_4194 0.60 -0.4
1,585,812 - -0.2
1,586,712 + -0.2
1,586,718 + +0.5
1,586,725 + -0.9
1,586,863 - +1.1
1,586,874 - +0.1
1,587,157 + 12564 mRNA_4196 0.29 +0.1
1,587,159 - 12564 mRNA_4196 0.29 -0.0
1,587,181 - 12564 mRNA_4196 0.31 +0.1
1,587,458 - 12564 mRNA_4196 0.56 +0.2

Or see this region's nucleotide sequence