Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4240

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12607 and 12608 are separated by 409 nucleotides12608 and 12609 are separated by 575 nucleotides mRNA_4239: 12607 - Hypothetical Protein, at 1,691,409 to 1,692,539 12607 mRNA_4240: 12608 - KOG1700 Regulatory protein MLP and related LIM proteins, at 1,692,949 to 1,695,625 12608 mRNA_4241: 12609 - Hypothetical Protein, at 1,696,201 to 1,696,797 12609

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,692,026 - 12607 mRNA_4239 0.55 +1.7
1,692,027 + 12607 mRNA_4239 0.55 -0.0
1,692,031 - 12607 mRNA_4239 0.55 -0.4
1,692,108 + 12607 mRNA_4239 0.62 -1.6
1,692,124 - 12607 mRNA_4239 0.63 -0.2
1,692,126 + 12607 mRNA_4239 0.63 -2.5
1,692,189 - 12607 mRNA_4239 0.69 -0.0
1,692,242 - 12607 mRNA_4239 0.74 +1.1
1,692,331 + 12607 mRNA_4239 0.82 -0.9
1,692,480 - +1.6
1,692,568 + -2.2
1,692,579 - +1.2
1,692,612 - +0.3
1,692,737 + +1.4
1,692,878 + +0.2
1,693,023 - +0.1
1,693,029 - +1.7
1,693,045 - -0.1
1,693,054 + +0.5
1,693,077 - -1.2
1,693,614 + 12608 mRNA_4240 0.25 -1.6
1,693,931 - 12608 mRNA_4240 0.37 +0.4
1,694,378 + 12608 mRNA_4240 0.53 +2.1
1,694,514 - 12608 mRNA_4240 0.58 +0.8
1,694,518 + 12608 mRNA_4240 0.59 -0.9
1,694,538 + 12608 mRNA_4240 0.59 -0.3
1,694,957 + 12608 mRNA_4240 0.75 -1.4
1,695,065 - 12608 mRNA_4240 0.79 +0.0
1,695,122 + 12608 mRNA_4240 0.81 -0.2
1,695,266 + 12608 mRNA_4240 0.87 +1.6
1,695,271 + 12608 mRNA_4240 0.87 -0.0
1,695,312 + 12608 mRNA_4240 0.88 -0.5
1,695,491 + -0.7
1,695,496 - +0.4
1,695,532 + +0.2
1,695,535 - +0.7
1,695,684 + -0.2
1,695,803 + +0.6
1,695,849 - -1.8
1,695,982 - +1.4
1,696,074 + +1.1
1,696,113 - -0.7
1,696,392 - 12609 mRNA_4241 0.32 -0.8
1,696,408 - 12609 mRNA_4241 0.35 +0.3
1,696,408 + 12609 mRNA_4241 0.35 +1.8
1,696,429 + 12609 mRNA_4241 0.38 +0.1
1,696,526 + 12609 mRNA_4241 0.54 -1.6
1,696,547 + 12609 mRNA_4241 0.58 +0.2
1,696,558 - 12609 mRNA_4241 0.60 +0.5
1,696,598 + 12609 mRNA_4241 0.66 -0.5

Or see this region's nucleotide sequence