Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4270

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12638 and 12639 are separated by 110 nucleotides mRNA_4270: 12638 - Hypothetical Protein, at 1,758,369 to 1,759,007 12638 mRNA_4271: 12639 - K01196 AGL glycogen debranching enzyme, at 1,759,118 to 1,764,832 12639

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,757,607 + +1.1
1,758,063 - +0.5
1,758,144 + -1.4
1,758,228 + +0.5
1,758,239 - +0.2
1,758,330 - -1.8
1,758,360 + +0.5
1,758,391 + +1.3
1,758,703 + 12638 mRNA_4270 0.52 -1.1
1,758,978 - -0.3
1,759,007 - +0.8
1,759,349 + +0.2
1,759,635 + -2.9
1,759,758 + 12639 mRNA_4271 0.11 -1.5
1,759,801 - 12639 mRNA_4271 0.12 -1.0

Or see this region's nucleotide sequence