Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4271

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12638 and 12639 are separated by 110 nucleotides12639 and 12640 are separated by 305 nucleotides mRNA_4270: 12638 - Hypothetical Protein, at 1,758,369 to 1,759,007 12638 mRNA_4271: 12639 - K01196 AGL glycogen debranching enzyme, at 1,759,118 to 1,764,832 12639 mRNA_4272: 12640 - K02433 gatA, QRSL1 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 1,765,138 to 1,767,269 12640

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,758,144 + -1.4
1,758,228 + +0.5
1,758,239 - +0.2
1,758,330 - -1.8
1,758,360 + +0.5
1,758,391 + +1.3
1,758,703 + 12638 mRNA_4270 0.52 -1.1
1,758,978 - -0.3
1,759,007 - +0.8
1,759,349 + +0.2
1,759,635 + -2.9
1,759,758 + 12639 mRNA_4271 0.11 -1.5
1,759,801 - 12639 mRNA_4271 0.12 -1.0
1,760,096 + 12639 mRNA_4271 0.17 -3.3
1,760,280 - 12639 mRNA_4271 0.20 -2.8
1,760,406 + 12639 mRNA_4271 0.23 +0.1
1,760,429 - 12639 mRNA_4271 0.23 -1.7
1,760,430 + 12639 mRNA_4271 0.23 -2.7
1,760,541 + 12639 mRNA_4271 0.25 -1.6
1,760,655 + 12639 mRNA_4271 0.27 -2.6
1,760,682 + 12639 mRNA_4271 0.27 -3.0
1,760,786 - 12639 mRNA_4271 0.29 -1.6
1,761,192 - 12639 mRNA_4271 0.36 -3.7
1,761,524 - 12639 mRNA_4271 0.42 -2.7
1,761,548 - 12639 mRNA_4271 0.43 -1.2
1,761,760 - 12639 mRNA_4271 0.46 -1.6
1,762,395 + 12639 mRNA_4271 0.57 -1.3
1,762,536 + 12639 mRNA_4271 0.60 -3.2
1,762,689 - 12639 mRNA_4271 0.62 -0.5
1,762,827 + 12639 mRNA_4271 0.65 -2.2
1,763,321 - 12639 mRNA_4271 0.74 -2.6
1,763,559 - 12639 mRNA_4271 0.78 -3.4
1,763,570 - 12639 mRNA_4271 0.78 -1.9
1,764,481 - -2.0
1,764,587 - -2.0
1,764,589 - -0.5
1,764,590 - -3.1
1,764,618 + -0.6
1,764,748 + -1.6
1,764,755 + -3.2
1,764,755 + -0.6
1,764,759 - -2.2
1,764,882 + -0.3
1,764,884 + +0.3
1,764,901 - +0.3
1,764,901 - +2.1
1,764,915 + +1.4
1,764,915 + +0.2
1,764,921 + +0.4
1,764,932 + +0.4
1,764,935 + +0.7
1,765,074 - +1.0
1,765,074 - +0.5
1,765,080 - -1.2
1,765,082 - -0.8
1,765,083 + +0.4
1,765,085 + -0.8
1,765,087 - +0.1
1,765,089 - +0.7
1,765,093 + +0.4

Or see this region's nucleotide sequence