Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4368

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12735 and 12736 are separated by 97 nucleotides mRNA_4367: 12735 - K08856 STK16 serine/threonine kinase 16, at 24,559 to 26,572 12735 mRNA_4368: 12736 - K00652 bioF 8-amino-7-oxononanoate synthase, at 26,670 to 28,178 12736

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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25,723 - 12735 mRNA_4367 0.58 +1.4
26,112 - 12735 mRNA_4367 0.77 -0.2
26,284 + 12735 mRNA_4367 0.86 -1.3
26,307 + 12735 mRNA_4367 0.87 +0.8
26,442 + -0.4
26,467 + -2.8
26,605 - +1.4
26,610 + +0.7
28,226 - +0.0
28,232 + -0.0
28,240 + +0.2
28,357 - +1.1
28,362 + -2.2
28,481 + -0.2
28,533 + -0.1
28,680 + +0.5
28,784 - +0.8
28,862 - +0.8
28,867 + -1.0
28,867 + -0.1
28,870 - -1.9
28,878 - -0.7
29,035 - +0.7
29,094 + +0.8
29,103 + +0.6

Or see this region's nucleotide sequence