Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4397

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12763 and 12764 are separated by 221 nucleotides12764 and 12765 are separated by 150 nucleotides12765 and 12766 are separated by 387 nucleotides mRNA_4395: 12763 - HMMPfam-RTA1 like protein-PF04479, at 88,066 to 89,251 12763 mRNA_4396: 12764 - BLAST NAD(P)-dependent alcohol dehydrogenase [Mycena chloro..., at 89,473 to 89,864 12764 mRNA_4397: 12765 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129, at 90,015 to 90,968 12765 mRNA_4398: 12766 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 91,356 to 92,891 12766

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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89,115 - 12763 mRNA_4395 0.88 +0.7
89,441 - -1.2
89,921 + -0.4
90,004 - +0.0
91,566 + 12766 mRNA_4398 0.14 +0.1
91,621 - 12766 mRNA_4398 0.17 -1.2
91,865 - 12766 mRNA_4398 0.33 +0.6
91,922 + 12766 mRNA_4398 0.37 +1.8
91,960 + 12766 mRNA_4398 0.39 -2.8

Or see this region's nucleotide sequence