Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4447

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12814 and 12815 are separated by 220 nucleotides12815 and 12816 are separated by 89 nucleotides mRNA_4446: 12814 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 200,196 to 203,838 12814 mRNA_4447: 12815 - K12666 OST1, RPN1 oligosaccharyltransferase complex subunit alpha (ribophorin I), at 204,059 to 206,130 12815 mRNA_4448: 12816 - KOG3979 FGF receptor activating protein 1, at 206,220 to 210,253 12816

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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203,097 + 12814 mRNA_4446 0.80 -0.2
203,393 - 12814 mRNA_4446 0.88 +0.0
203,431 + 12814 mRNA_4446 0.89 +0.1
203,464 - 12814 mRNA_4446 0.90 +0.8
203,531 - +0.1
203,567 + -0.4
203,572 - -0.3
203,700 - +0.3
203,704 - +0.4
203,707 + +1.0
203,710 + -1.0
203,711 - +0.2
203,728 + -1.4
203,736 + -1.1
203,856 - +0.8
203,857 + +1.1
203,865 + +0.4
203,893 + -1.7
203,893 - -3.9
204,457 + 12815 mRNA_4447 0.19 -0.7
204,836 - 12815 mRNA_4447 0.38 +2.1
206,487 + +1.9
206,930 - 12816 mRNA_4448 0.18 -1.2
206,987 + 12816 mRNA_4448 0.19 +0.4
207,076 - 12816 mRNA_4448 0.21 +2.1

Or see this region's nucleotide sequence