Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4455

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12822 and 12823 are separated by 185 nucleotides12823 and 12824 are separated by 120 nucleotides mRNA_4454: 12822 - K03380 E1.14.13.7 phenol 2-monooxygenase, at 223,173 to 226,550 12822 mRNA_4455: 12823 - K08489 STX16 syntaxin 16, at 226,736 to 228,552 12823 mRNA_4456: 12824 - BLAST C-x8-C-x5-C-x3-H type zinc finger protein [Nanniz..., at 228,673 to 230,476 12824

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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225,905 - 12822 mRNA_4454 0.81 +0.8
225,905 - 12822 mRNA_4454 0.81 +0.1
226,052 - 12822 mRNA_4454 0.85 -0.2
226,363 - -0.1
226,378 - +0.6
226,388 + +0.5
226,388 + +0.0
226,458 + -0.6
226,510 + -1.8
226,539 - +0.4
226,699 - +0.8
226,823 + +1.5
226,837 - +0.1
226,856 - -0.7
226,868 - -1.4
226,972 - 12823 mRNA_4455 0.13 +0.2
227,382 + 12823 mRNA_4455 0.36 -1.5
227,586 - 12823 mRNA_4455 0.47 -0.1
227,593 + 12823 mRNA_4455 0.47 +0.5
227,708 - 12823 mRNA_4455 0.53 +0.0
227,801 - 12823 mRNA_4455 0.59 +0.5
227,960 - 12823 mRNA_4455 0.67 +1.6
228,309 + 12823 mRNA_4455 0.87 +0.3
228,428 - -2.5
228,431 - +1.2
228,586 + +1.7
228,589 + +0.1
228,594 - +1.9
228,595 - +0.4
228,598 - +0.1
228,613 + -1.8
228,621 - +1.7
228,621 - +0.6
228,720 + +1.0
228,735 - -0.4
228,740 - -0.5
228,898 - 12824 mRNA_4456 0.12 -1.0
228,914 + 12824 mRNA_4456 0.13 -0.4
228,922 + 12824 mRNA_4456 0.14 -0.9
228,936 - 12824 mRNA_4456 0.15 -0.0
228,974 - 12824 mRNA_4456 0.17 -2.3
229,027 + 12824 mRNA_4456 0.20 +0.0
229,028 - 12824 mRNA_4456 0.20 -1.2
229,056 + 12824 mRNA_4456 0.21 -1.0
229,067 - 12824 mRNA_4456 0.22 -0.3
229,070 - 12824 mRNA_4456 0.22 -0.5
229,071 + 12824 mRNA_4456 0.22 -0.2
229,121 + 12824 mRNA_4456 0.25 +1.9
229,197 - 12824 mRNA_4456 0.29 -0.2
229,211 - 12824 mRNA_4456 0.30 -0.6
229,228 - 12824 mRNA_4456 0.31 -0.4
229,229 + 12824 mRNA_4456 0.31 +2.2
229,235 + 12824 mRNA_4456 0.31 +0.5
229,237 - 12824 mRNA_4456 0.31 +0.2
229,333 - 12824 mRNA_4456 0.37 +0.6
229,335 + 12824 mRNA_4456 0.37 -0.1

Or see this region's nucleotide sequence