Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4466

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12833 and 12834 are separated by 403 nucleotides12834 and 12835 are separated by 236 nucleotides mRNA_4465: 12833 - Hypothetical Protein, at 246,095 to 248,663 12833 mRNA_4466: 12834 - Hypothetical Protein, at 249,067 to 250,434 12834 mRNA_4467: 12835 - Hypothetical Protein, at 250,671 to 251,291 12835

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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248,238 + 12833 mRNA_4465 0.83 -1.3
248,277 + 12833 mRNA_4465 0.85 -0.0
248,847 - -0.8
249,119 - +0.0
249,149 - -1.5
249,152 - +1.4
249,609 + 12834 mRNA_4466 0.40 +0.5
249,888 + 12834 mRNA_4466 0.60 -1.3
249,925 + 12834 mRNA_4466 0.63 +0.1
250,362 + -0.0
250,510 - -1.4
250,520 - +0.0
250,537 - -0.9
250,621 - +0.0
250,770 + 12835 mRNA_4467 0.16 +0.6
250,895 - 12835 mRNA_4467 0.36 +0.0
250,902 + 12835 mRNA_4467 0.37 -1.7
251,272 + +1.1

Or see this region's nucleotide sequence