Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4473

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12841 and 12842 are separated by 138 nucleotides mRNA_4473: 12841 - K19782 DSS1, MSU1 exoribonuclease II, mitochondrial, at 265,412 to 268,856 12841 mRNA_4474: 12842 - K01426 E3.5.1.4, amiE amidase, at 268,995 to 271,231 12842

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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264,501 - +1.5
264,502 - -0.5
264,592 - +0.4
264,740 - -1.6
264,748 + -2.1
264,764 + -0.1
265,041 - -0.4
265,049 + -1.5
265,188 - +0.7
265,200 + -1.6
265,202 + -0.9
265,335 - -0.6
268,960 - +0.6
269,057 + +0.2
269,062 + -1.1
269,122 + +0.1
269,245 + 12842 mRNA_4474 0.11 +2.1
269,318 - 12842 mRNA_4474 0.14 -1.4
269,330 - 12842 mRNA_4474 0.15 -0.1
269,403 + 12842 mRNA_4474 0.18 +1.1
269,417 + 12842 mRNA_4474 0.19 +0.5
269,420 + 12842 mRNA_4474 0.19 +0.7
269,432 + 12842 mRNA_4474 0.20 -1.0
269,554 - 12842 mRNA_4474 0.25 +0.9
269,575 - 12842 mRNA_4474 0.26 +0.3
269,612 + 12842 mRNA_4474 0.28 +1.8
269,675 + 12842 mRNA_4474 0.30 +0.5

Or see this region's nucleotide sequence