Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4511

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12879 and 12880 are separated by 432 nucleotides mRNA_4511: 12879 - Hypothetical Protein, at 351,400 to 352,761 12879 mRNA_4512: 12880 - KOG1152 Signal transduction serine/threonine kinase with PAS/PAC sensor domain, at 353,194 to 354,896 12880

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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350,449 + -1.9
350,457 + +0.9
350,479 - -1.7
350,484 + +0.2
350,586 - +0.2
350,603 + -0.6
350,650 - +0.1
350,797 + -0.8
350,800 - -0.8
350,803 + -0.5
350,817 + -2.7
350,817 + -1.8
350,921 - -0.6
350,941 - -0.2
350,947 + -0.6
350,948 - -0.2
350,969 + +1.2
351,086 - +0.3
351,088 + +0.3
351,110 - -0.2
351,128 + +1.1
351,176 + +1.1
351,226 + -0.3
351,236 + -1.0
351,284 + +2.0
351,351 + -1.1
351,447 - -0.4
351,511 - +0.7
351,526 - -0.2
351,545 + 12879 mRNA_4511 0.11 +0.1
351,603 - 12879 mRNA_4511 0.15 -0.4
351,605 - 12879 mRNA_4511 0.15 +0.1
351,627 + 12879 mRNA_4511 0.17 -1.0
351,657 - 12879 mRNA_4511 0.19 -1.6
351,665 + 12879 mRNA_4511 0.19 -1.5
351,670 - 12879 mRNA_4511 0.20 -0.3
351,676 - 12879 mRNA_4511 0.20 -0.9
351,688 - 12879 mRNA_4511 0.21 +0.9
351,693 - 12879 mRNA_4511 0.22 -0.1
351,709 + 12879 mRNA_4511 0.23 +0.1
351,727 - 12879 mRNA_4511 0.24 +0.3
351,791 - 12879 mRNA_4511 0.29 +0.1
351,805 + 12879 mRNA_4511 0.30 +0.9
351,814 + 12879 mRNA_4511 0.30 -1.1
351,816 - 12879 mRNA_4511 0.31 +1.1
351,823 - 12879 mRNA_4511 0.31 +0.2
351,849 - 12879 mRNA_4511 0.33 -0.1
351,879 - 12879 mRNA_4511 0.35 -0.1
351,945 + 12879 mRNA_4511 0.40 +1.0
351,962 - 12879 mRNA_4511 0.41 -0.6
352,038 - 12879 mRNA_4511 0.47 -1.6
352,042 - 12879 mRNA_4511 0.47 -0.7
352,051 - 12879 mRNA_4511 0.48 -0.7
352,056 + 12879 mRNA_4511 0.48 +0.2
352,056 + 12879 mRNA_4511 0.48 +0.1
352,059 + 12879 mRNA_4511 0.48 -2.1
352,073 + 12879 mRNA_4511 0.49 -0.8
352,093 + 12879 mRNA_4511 0.51 -0.8
352,113 - 12879 mRNA_4511 0.52 -0.7
352,131 - 12879 mRNA_4511 0.54 +1.1
352,196 + 12879 mRNA_4511 0.58 +0.8
352,207 + 12879 mRNA_4511 0.59 -0.0
352,208 - 12879 mRNA_4511 0.59 +0.4
352,211 + 12879 mRNA_4511 0.60 +1.8
352,220 - 12879 mRNA_4511 0.60 +0.3
352,220 + 12879 mRNA_4511 0.60 -0.3
352,221 - 12879 mRNA_4511 0.60 +0.1
352,224 - 12879 mRNA_4511 0.60 +0.2
352,225 + 12879 mRNA_4511 0.61 -0.1
352,227 + 12879 mRNA_4511 0.61 +0.9
352,246 + 12879 mRNA_4511 0.62 +0.2
352,259 + 12879 mRNA_4511 0.63 +1.5
352,269 - 12879 mRNA_4511 0.64 +0.4
352,275 - 12879 mRNA_4511 0.64 +0.7
352,276 + 12879 mRNA_4511 0.64 -1.8
352,286 - 12879 mRNA_4511 0.65 -1.1
352,288 - 12879 mRNA_4511 0.65 -0.1
352,304 - 12879 mRNA_4511 0.66 +0.5
352,304 - 12879 mRNA_4511 0.66 -0.7
352,304 + 12879 mRNA_4511 0.66 -1.3
352,305 + 12879 mRNA_4511 0.66 -3.6
352,315 + 12879 mRNA_4511 0.67 +1.6
352,318 + 12879 mRNA_4511 0.67 -2.5
352,324 - 12879 mRNA_4511 0.68 +0.3
352,420 + 12879 mRNA_4511 0.75 +0.2
352,424 - 12879 mRNA_4511 0.75 +0.3
352,437 + 12879 mRNA_4511 0.76 +0.7
352,457 + 12879 mRNA_4511 0.78 +0.9
352,470 - 12879 mRNA_4511 0.79 +0.3
352,479 - 12879 mRNA_4511 0.79 -2.7
352,617 + 12879 mRNA_4511 0.89 -0.5
352,623 - 12879 mRNA_4511 0.90 +1.2
352,625 - +0.1
352,625 - -0.5
352,665 - +1.3
352,816 - +0.3
353,252 - +0.5
353,386 + 12880 mRNA_4512 0.11 +1.4
353,675 + 12880 mRNA_4512 0.28 +1.1

Or see this region's nucleotide sequence