Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4556

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12923 and 12924 are separated by 163 nucleotides12924 and 12925 are separated by 62 nucleotides mRNA_4555: 12923 - KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis, at 452,202 to 455,003 12923 mRNA_4556: 12924 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 455,167 to 456,572 12924 mRNA_4557: 12925 - KOG3318 Predicted membrane protein, at 456,635 to 457,680 12925

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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454,725 - -1.0
455,273 - +1.5
455,294 + -1.6
455,786 + 12924 mRNA_4556 0.44 +2.9
455,964 - 12924 mRNA_4556 0.57 -2.0
456,452 + -2.1
456,748 - 12925 mRNA_4557 0.11 -2.0
456,763 + 12925 mRNA_4557 0.12 -0.3
456,799 - 12925 mRNA_4557 0.16 +0.8
456,915 + 12925 mRNA_4557 0.27 -0.2
456,918 + 12925 mRNA_4557 0.27 +1.5
457,349 + 12925 mRNA_4557 0.68 +0.4
457,364 - 12925 mRNA_4557 0.70 -0.9

Or see this region's nucleotide sequence