Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4568

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12935 and 12936 are separated by 219 nucleotides12936 and 12937 are separated by 155 nucleotides mRNA_4567: 12935 - K10743 RNASEH2A ribonuclease H2 subunit A, at 484,052 to 485,585 12935 mRNA_4568: 12936 - Hypothetical Protein, at 485,805 to 489,325 12936 mRNA_4569: 12937 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 489,481 to 490,955 12937

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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485,134 - 12935 mRNA_4567 0.71 -0.4
485,251 - 12935 mRNA_4567 0.78 +1.3
485,252 + 12935 mRNA_4567 0.78 +0.8
485,885 + +0.5
486,172 + 12936 mRNA_4568 0.10 -0.2
486,349 - 12936 mRNA_4568 0.15 -1.2
486,444 + 12936 mRNA_4568 0.18 +0.6
486,744 - 12936 mRNA_4568 0.27 +0.9
486,861 + 12936 mRNA_4568 0.30 -0.6
488,063 + 12936 mRNA_4568 0.64 -0.5
488,168 + 12936 mRNA_4568 0.67 +0.5
488,271 - 12936 mRNA_4568 0.70 +1.3
488,351 - 12936 mRNA_4568 0.72 -2.7
488,352 + 12936 mRNA_4568 0.72 -0.2
488,357 + 12936 mRNA_4568 0.72 +1.6
488,371 - 12936 mRNA_4568 0.73 +0.2
488,525 + 12936 mRNA_4568 0.77 +0.2
488,662 + 12936 mRNA_4568 0.81 +0.5
488,954 - 12936 mRNA_4568 0.89 -1.8
489,115 + -0.5
489,246 - +0.3
489,812 + 12937 mRNA_4569 0.22 +0.3

Or see this region's nucleotide sequence